Here's a summary, there is lots of good advice here, as expected. Thanks for that guys.
I think that Jason's recommendation about the generator makes sense. To run it with no load, then loaded, then no load. Especially since Frank says that it is better not to run the mains, unless I run them under a load to get them hot enough to clean everything out.
jitts3 says to run the engine to help with battery maintenace. My main baterry's do seem noticeably weaker when they sit for a few weeks, but they have not failed (yet). I do make sure to maintain the fluid levels and I replaced the gen. battery last year.
osd9's comments about the fuel has got me concerned. I have never used a stabilizer in the fuel in this boat but I do keep the tanks topped off to decrease condensation.
Frank said it is better to only run the main engines if they can be run under a load, so I agree with wish2fish, make this is a good excuse to take a cold water cruise.
As Gary recommended, I am getting the zincs checked (changed) and the impellers looked at this week, along with other preventive stuff.
I have not noticed the condensation in the engine room though. I do have a Bilge-Safe heater, the kind that only comes on when its really cold. So the engine room stays fairly chilly. The outside temperature is consistently a few degrees warmer on the southside, than it is in Hampton, if that would make a difference?? And engine room seemed very dry to me when I was on the boat this weekend. No condensation.
I am thinking that I should ask them to add the raw water flush & coolant change to the list $$$

(and I did look up and read the thread about the fuel coolers). I wish that I was as handy as you are. I don't think that is something I could tackle on my own.
Again, thanks for all the advice. This is really great information and I am grateful to you all.